halophFGD

Basic Information

Locus ID: Oco04G008290

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG04	8468944	8477657	-	Oco04G008290

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.38	39,714.43 Da	60.75	98.94	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	28	66	3.1E-6	IPR001810
SUPERFAMILY	SSF81383	F-box domain	28	78	2.49E-12	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	27	67	4.3E-6	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_052142898.1	uncharacterized protein LOC127762429 [Oryza glaberrima]	0
TrEMBL	A0A0D9YQR6	F-box domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	16	AH02.1784, AH07.1452, AH07.1901, AH07.1934, BH07.1147 ... BH07.1413, BH07.1435, BH07.1908, BH08.1369, CH07.1033, CH07.1126, CH07.1132, CH07.1145, CH07.1151, CH07.927, CH08.1785
Poaceae	Eleusine coracana subsp. coracana	27	gene-QOZ80_2AG0110190, gene-QOZ80_2AG0110220 ... gene-QOZ80_2AG0110280, gene-QOZ80_2AG0110360, gene-QOZ80_2AG0110370, gene-QOZ80_2AG0110390, gene-QOZ80_2AG0110400, gene-QOZ80_2AG0110410, gene-QOZ80_2AG0111460, gene-QOZ80_2AG0111470, gene-QOZ80_2AG0112350, gene-QOZ80_2AG0129810, gene-QOZ80_2BG0163700, gene-QOZ80_2BG0163770, gene-QOZ80_2BG0163790, gene-QOZ80_2BG0163830, gene-QOZ80_2BG0163840, gene-QOZ80_2BG0163850, gene-QOZ80_2BG0163860, gene-QOZ80_2BG0163870, gene-QOZ80_2BG0164930, gene-QOZ80_2BG0164940, gene-QOZ80_2BG0165720, gene-QOZ80_2BG0184810, gene-QOZ80_4AG0320630, gene-QOZ80_6AG0508590, gene-QOZ80_6AG0508610
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.3HG0314570.1.CDS1 ... HORVU.MOREX.r3.3HG0314590.1.CDS1, HORVU.MOREX.r3.3HG0314720.1.CDS1, HORVU.MOREX.r3.3HG0314740.1.CDS1
Poaceae	Lolium multiflorum	7	gene-QYE76_015261, gene-QYE76_015310, gene-QYE76_017079 ... gene-QYE76_041523, gene-QYE76_057756, gene-QYE76_057833, gene-QYE76_057908
Poaceae	Oryza coarctata	5	Oco03G007930, Oco03G008160, Oco04G008280, Oco04G008290 ... Oco07G002840
Poaceae	Oryza sativa	5	LOC_Os02g18630.1, LOC_Os02g18640.1, LOC_Os02g19200.1 ... LOC_Os04g24820.1, LOC_Os04g25840.1
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0505900, Pt_Chr0600724
Poaceae	Sporobolus alterniflorus	5	Chr06G031530, Chr06G031540, Chr0G015730, Chr13G012900 ... Chr14G001690
Poaceae	Thinopyrum elongatum	6	Tel1E01G687800, Tel3E01G732700, Tel3E01G733300 ... Tel3E01G735300, Tel3E01G735800, Tel3E01G736000
Poaceae	Triticum dicoccoides	6	gene_TRIDC3AG065160, gene_TRIDC3AG065250 ... gene_TRIDC3BG073870, gene_TRIDC3BG074090, gene_TRIDC3BG074110, gene_TRIDC3BG074120
Poaceae	Triticum aestivum	21	TraesCS1A02G415600.1, TraesCS3A02G461700.1 ... TraesCS3A02G461800.1, TraesCS3A02G462700.1, TraesCS3A02G463100.1.cds1, TraesCS3B02G504300.1, TraesCS3B02G504400.1.cds1, TraesCS3B02G504600.1.cds1, TraesCS3B02G505600.1.cds1, TraesCS3B02G505900.1.cds1, TraesCS3B02G506100.1.cds1, TraesCS3B02G506300.1.cds1, TraesCS3D02G455100.1, TraesCS3D02G455200.1.cds1, TraesCS3D02G455400.1.cds1, TraesCS3D02G456200.1, TraesCS3D02G456400.1.cds1, TraesCS3D02G456600.1, TraesCS3D02G456800.1.cds1, TraesCS3D02G457000.1.cds1, TraesCS3D02G457100.1
Poaceae	Zea mays	1	Zm00001eb240310_P001
Poaceae	Zoysia japonica	4	nbis-gene-16342, nbis-gene-34069, nbis-gene-45207 ... nbis-gene-57917
Poaceae	Zoysia macrostachya	4	Zma_g12618, Zma_g15259, Zma_g15303, Zma_g2662