Basic Information
Locus ID:
Oco04G007650
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 7487050 | 7503647 | + | Oco04G007650 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 77,404.51 Da | 47.47 | 81.53 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 308 | 363 | 1.8E-13 | IPR000504 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 38 | 1.24E-5 | IPR036047 |
| SUPERFAMILY | SSF81383 | F-box domain | 368 | 408 | 2.22E-6 | IPR036047 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 301 | 364 | 2.04E-16 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 308 | 373 | 4.5E-16 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 307 | 380 | 4.0E-11 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 306 | 388 | 13.754213 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 0 |
| RefSeq | XP_040376343.1 | uncharacterized protein LOC121053470 [Oryza brachyantha] | 0 |
| Q04836 | 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JY86 | RRM domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology