Basic Information
Locus ID:
Oco04G007090
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Seed storage protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 6653412 | 6654009 | - | Oco04G007090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 20,390.19 Da | 75.98 | 70.98 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 121 | 163 | 7.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 169 | 8.84E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 91 | 168 | 2.4E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 121 | 162 | 2.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 121 | 163 | 12.356501 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16720.1 | TOXICOS EN LEVADURA 2. RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. | 0 |
| RefSeq | XP_025878557.1 | probable E3 ubiquitin-protein ligase ATL44 [Oryza sativa Japonica Group] | 0 |
| Q8L9T5 | RING-H2 finger protein ATL2 OS=Arabidopsis thaliana OX=3702 GN=ATL2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0FMV4 | RING-type domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology