Basic Information
Locus ID:
Oco04G007070
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 6640528 | 6641399 | - | Oco04G007070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 22,156.30 Da | 50.92 | 87.96 | 0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 143 | 185 | 5.0E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 192 | 3.3E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 192 | 7.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 143 | 184 | 4.4E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 143 | 185 | 12.651561 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040376331.1 | RING-H2 finger protein ATL39-like [Oryza brachyantha] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6G1FCA6 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_025556 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH07.1150, CH07.928 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0107810, gene-QOZ80_2BG0161430 |
| Poaceae | Oryza coarctata | 1 | Oco04G007070 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G104300 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013670, Chr0G033250, Chr15G023330 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50886 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12516 |