Basic Information
Locus ID:
Oco04G007060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 6638579 | 6639196 | - | Oco04G007060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 20,705.87 Da | 49.35 | 96.78 | 0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 128 | 170 | 2.72854E-16 | - |
| Pfam | PF13639 | Ring finger domain | 128 | 170 | 3.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 127 | 176 | 3.53E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 177 | 6.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 128 | 169 | 5.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 128 | 170 | 12.326995 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_040376330.1 | probable E3 ubiquitin-protein ligase ATL44 [Oryza brachyantha] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6G1FC36 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_025557 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology