Basic Information
Locus ID:
Oco04G007050
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Seed storage protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 6635084 | 6635722 | - | Oco04G007050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.79 | 23,015.20 Da | 45.95 | 103.92 | 0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 3.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 204 | 4.54E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 204 | 2.2E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 156 | 197 | 4.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 198 | 11.913911 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G55530.1 | RING/U-box superfamily protein. Encodes an intracellular membrane localized protein with E3 ligase activity that is involved in regulation of ABA signaling. Loss of function alleles show decreased sensitivity to ABA. Overexpression results in increased sensitivity to ABA. | 0 |
| RefSeq | XP_052145271.1 | probable E3 ubiquitin-protein ligase ATL45 [Oryza glaberrima] | 0 |
| Q9M2S6 | E3 ubiquitin-protein ligase SDIR1 OS=Arabidopsis thaliana OX=3702 GN=SDIR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1FCA0 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_025558 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH07.1025, AH07.1027, AH07.1028, BH07.1144, BH07.1146 ... |
| Poaceae | Eleusine coracana subsp. coracana | 6 | gene-QOZ80_2AG0107740, gene-QOZ80_2AG0108990 ... |
| Poaceae | Oryza coarctata | 3 | Oco03G006770, Oco04G007040, Oco04G007050 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g15000.1, LOC_Os02g15010.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G104000, gene-BS78_04G104100 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013650, Chr0G033270, Chr15G023350 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G503100, Tel1E01G503200 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1BG052490, gene_TRIDC1BG052500 |
| Poaceae | Triticum aestivum | 14 | TraesCS1A02G311600.1.cds1, TraesCS1B02G323200.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb238450_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34201, nbis-gene-53144 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12514, Zma_g15401 |