Basic Information
Locus ID:
Oco04G006910
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBP15
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 6456745 | 6464903 | - | Oco04G006910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 108,002.43 Da | 52.45 | 66.95 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 441 | 746 | 4.99505E-162 | - |
| Pfam | PF01753 | MYND finger | 88 | 125 | 8.5E-9 | IPR002893 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 443 | 745 | 1.4E-41 | IPR001394 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 84 | 129 | 7.15E-11 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 440 | 748 | 2.35E-84 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 437 | 752 | 1.6E-87 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 76 | 129 | 4.0E-11 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 442 | 748 | 50.11705 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 88 | 125 | 11.706373 | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 443 | 458 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 787 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 325 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 367 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17110.1 | ubiquitin-specific protease 15. Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant. | 0 |
| RefSeq | XP_052143274.1 | ubiquitin C-terminal hydrolase 15 [Oryza glaberrima] | 0 |
| Q0E2F9 | Ubiquitin C-terminal hydrolase 15 OS=Oryza sativa subsp. japonica OX=39947 GN=UBP15 PE=2 SV=1 | 0 | |
| TrEMBL | I1NYX5 | Ubiquitin carboxyl-terminal hydrolase 15 OS=Oryza glaberrima OX=4538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology