Basic Information
Locus ID:
Oco04G006340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 5768245 | 5771696 | - | Oco04G006340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 113,245.81 Da | 39.72 | 95.57 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 700 | 974 | 3.9219E-84 | - |
| Pfam | PF13855 | Leucine rich repeat | 225 | 284 | 8.4E-8 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 94 | 137 | 2.5E-8 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 695 | 903 | 6.1E-41 | IPR000719 |
| Pfam | PF12799 | Leucine Rich repeats (2 copies) | 506 | 542 | 5.3E-7 | IPR025875 |
| SUPERFAMILY | SSF52047 | RNI-like | 82 | 432 | 2.12E-59 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 678 | 974 | 1.34E-71 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 376 | 598 | 1.73E-33 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 676 | 776 | 5.4E-21 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 194 | 293 | 1.6E-25 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 552 | 617 | 7.9E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 294 | 551 | 1.4E-66 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 777 | 992 | 1.6E-55 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 39 | 193 | 6.3E-38 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 505 | 528 | 29.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 529 | 553 | 8.3 | IPR003591 |
| SMART | SM00220 | serkin_6 | 694 | 975 | 7.4E-39 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 100 | 124 | 24.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 125 | 148 | 290.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 247 | 271 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 342 | 366 | 250.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 198 | 223 | 230.0 | IPR003591 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 126 | 148 | 7.088198 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 694 | 976 | 36.781628 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 102 | 124 | 7.427029 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 700 | 733 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 825 | 837 | - | IPR008271 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 529 | 542 | 2.3E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 127 | 140 | 2.3E-5 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 994 | 1015 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_040376752.1 | receptor-like protein kinase 5 [Oryza brachyantha] | 0 |
| P47735 | Receptor-like protein kinase 5 OS=Arabidopsis thaliana OX=3702 GN=RLK5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1FB93 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023470 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology