Basic Information
Locus ID:
Oco04G006120
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 5584172 | 5592150 | - | Oco04G006120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 61,603.37 Da | 50.30 | 75.60 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 227 | 263 | 0.16 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 41 | 506 | 1.07E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 75 | 523 | 2.4E-27 | IPR015943 |
| SMART | SM00320 | WD40_4 | 33 | 68 | 7.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 314 | 6.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 333 | 371 | 320.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 224 | 263 | 0.92 | IPR001680 |
| SMART | SM00320 | WD40_4 | 106 | 146 | 23.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 375 | 429 | 450.0 | IPR001680 |
| PIRSF | PIRSF037309 | PPA2_B55 | 13 | 516 | 2.5E-193 | IPR000009 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 106 | 120 | - | IPR018067 |
| ProSitePatterns | PS01025 | Protein phosphatase 2A regulatory subunit PR55 signature 2. | 233 | 247 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 484 | 513 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 263 | 290 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 93 | 121 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 402 | 428 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 376 | 401 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 291 | 319 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 235 | 262 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 320 | 347 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 122 | 150 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 47 | 67 | 2.8E-156 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 348 | 375 | 2.8E-156 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 163 | 182 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_015689537.2 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 [Oryza brachyantha] | 0 |
| A2X2K3 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1FBH9 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_023443 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology