Basic Information
Locus ID:
Oco04G006080
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 5506123 | 5509269 | + | Oco04G006080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.40 | 92,752.48 Da | 37.53 | 101.75 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 291 | 313 | 1.1 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 118 | 134 | 0.43 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 32 | 69 | 2.4E-6 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 147 | 165 | 0.14 | IPR001611 |
| Pfam | PF00069 | Protein kinase domain | 523 | 794 | 4.6E-39 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 507 | 797 | 1.04E-65 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 55 | 403 | 6.12E-59 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 289 | 399 | 9.7E-24 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 505 | 601 | 6.0E-18 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 602 | 818 | 1.5E-50 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 186 | 4.9E-36 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 187 | 288 | 1.5E-25 | IPR032675 |
| SMART | SM00220 | serkin_6 | 519 | 814 | 3.1E-31 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 143 | 168 | 280.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 239 | 266 | 190.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 313 | 337 | 49.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 95 | 119 | 8.8 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 519 | 798 | 35.721577 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 525 | 552 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 650 | 662 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25930.1 | Protein kinase family protein with leucine-rich repeat domain. | 0 |
| RefSeq | XP_015626475.1 | receptor-like protein kinase HSL1 [Oryza sativa Japonica Group] | 0 |
| Q9FGL5 | Receptor protein-tyrosine kinase CEPR1 OS=Arabidopsis thaliana OX=3702 GN=CEPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JXH1 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology