Basic Information
Locus ID:
Oco04G006020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 5449123 | 5454386 | + | Oco04G006020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 79,633.51 Da | 48.27 | 78.06 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 595 | 712 | 1.55526E-27 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 609 | 697 | 2.8E-9 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 439 | 567 | 5.6E-15 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 450 | 715 | 5.97E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 438 | 590 | 1.0E-27 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 591 | 717 | 6.0E-25 | IPR027417 |
| SMART | SM00490 | helicmild6 | 625 | 707 | 9.6E-4 | IPR001650 |
| SMART | SM00487 | ultradead3 | 419 | 596 | 2.8E-9 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 417 | 582 | 14.489008 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 594 | 717 | 10.210165 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 529 | 537 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 302 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 323 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 349 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 289 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 0 |
| RefSeq | XP_040376703.1 | LOW QUALITY PROTEIN: ATP-dependent RNA helicase DRS1-like [Oryza brachyantha] | 0 |
| Q0E2Q3 | Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 PE=3 SV=2 | 0 | |
| TrEMBL | J3LAY8 | DUF4283 domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology