Basic Information
Locus ID:
Oco04G005250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
EBF1
Description:
Leucine-rich repeat - CC (cysteine-containing) subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 4545875 | 4549051 | - | Oco04G005250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 69,600.29 Da | 43.84 | 102.75 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 278 | 300 | 0.014 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 570 | 592 | 1.3 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 252 | 274 | 1.3 | IPR001611 |
| Pfam | PF00646 | F-box domain | 59 | 99 | 1.2E-4 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 226 | 249 | 9.2E-4 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 349 | 598 | 7.46E-37 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 55 | 96 | 5.23E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 150 | 433 | 6.02E-29 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 146 | 249 | 7.0E-17 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 563 | 654 | 5.8E-15 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 250 | 456 | 3.7E-37 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 457 | 557 | 1.1E-16 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 252 | 277 | 0.11 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 544 | 569 | 0.075 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 464 | 489 | 34.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 278 | 303 | 0.0047 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 226 | 251 | 2.0E-7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 570 | 594 | 0.49 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 384 | 409 | 0.011 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 490 | 515 | 14.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 410 | 435 | 49.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 358 | 383 | 37.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 622 | 647 | 97.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 517 | 542 | 0.087 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 171 | 199 | 18.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 200 | 225 | 0.33 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 143 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 124 | 141 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G25490.1 | EIN3-binding F box protein 1. Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. | 0 |
| RefSeq | XP_040376416.1 | EIN3-binding F-box protein 1 [Oryza brachyantha] | 0 |
| Q9SKK0 | EIN3-binding F-box protein 1 OS=Arabidopsis thaliana OX=3702 GN=EBF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JWZ8 | F-box domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology