Basic Information
Locus ID:
Oco04G004690
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 4009304 | 4011934 | + | Oco04G004690 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 39,483.63 Da | 50.07 | 67.04 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 268 | 309 | 3.8E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 315 | 2.78E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 315 | 2.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 268 | 308 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 268 | 309 | 12.1057 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 341 | 368 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 73 | 89 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006647002.2 | uncharacterized protein LOC102721136 [Oryza brachyantha] | 0 |
| P0CH30 | E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1 | 0 | |
| TrEMBL | J3LAF8 | RING-type domain-containing protein OS=Oryza brachyantha OX=4533 GN=102721136 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH07.665, CH01.1561 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0104560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0574800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021194 |
| Poaceae | Oryza coarctata | 2 | Oco03G005240, Oco04G004690 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g09820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G069000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202201 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G033510, Chr15G024830 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG029770 |
| Poaceae | Triticum aestivum | 2 | TraesCS6B02G198800.1, TraesCS6D02G160300.1 |
| Poaceae | Zea mays | 1 | Zm00001eb206330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44122 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15100 |