Basic Information
Locus ID:
Oco04G004210
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
BRCA1-associated protein 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 3616619 | 3621042 | - | Oco04G004210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 54,336.54 Da | 47.50 | 74.35 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12437 | RRM_BRAP2_like | 67 | 148 | 9.68105E-30 | - |
| CDD | cd16457 | RING-H2_BRAP2 | 168 | 211 | 2.03367E-25 | - |
| Pfam | PF13639 | Ring finger domain | 169 | 210 | 2.9E-8 | IPR001841 |
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 221 | 280 | 9.5E-20 | IPR001607 |
| Pfam | PF07576 | BRCA1-associated protein 2 | 60 | 157 | 1.9E-32 | IPR011422 |
| SUPERFAMILY | SSF57850 | RING/U-box | 186 | 285 | 2.89E-26 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 211 | 7.0E-10 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 212 | 291 | 1.4E-14 | IPR013083 |
| SMART | SM00290 | Zf_UBP_1 | 220 | 269 | 3.2E-24 | IPR001607 |
| SMART | SM00184 | ring_2 | 170 | 209 | 5.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 170 | 210 | 12.917115 | IPR001841 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 219 | 280 | 20.587917 | IPR001607 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 476 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 485 | - | - |
| Coils | Coil | Coil | 393 | 438 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G26000.2 | zinc finger (C3HC4-type RING finger) family protein. | 0 |
| RefSeq | XP_015689535.1 | BRAP2 RING ZnF UBP domain-containing protein 2 [Oryza brachyantha] | 0 |
| O80996 | BRAP2 RING ZnF UBP domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BRIZ2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1D161 | BRCA1-associated protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_009059 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg13483, jg30151 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_26234, gene_8965 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah010413, Ah028443 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_8g193950 |
| Amaranthaceae | Salicornia bigelovii | 5 | Sbi_jg11643, Sbi_jg25645, Sbi_jg46752, Sbi_jg6727 ... |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19150, Seu_jg20897 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00001863, GOSA_00010991 |
| Amaranthaceae | Suaeda glauca | 5 | Sgl41994, Sgl46769, Sgl56022, Sgl60568, Sgl61215 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000007636, gene:ENSEOMG00000038006 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0009090, CQ.Regalona.r1.9BG0009040 |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30129530, pistato.v30129570, pistato.v30254900 |
| Apiaceae | Apium graveolens | 2 | Ag3G02757, Ag9G01191 |
| Arecaceae | Cocos nucifera | 2 | COCNU_11G000060, COCNU_11G008190 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103706462, gene-LOC103710083 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_05.3315.V1.1, AsparagusV1_08.1576.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri15G32698, Ftri16G26820 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G26000.2, AT2G42160.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004093m.g.v1.0, Thhalv10018494m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g26300.v2.2, Sp5g35210.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB05g075610.2N, BniB06g011650.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq06G0597 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl06G0617 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno02g05440, gene.Cymno03g03720 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0313s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate07g07880, gene.Thate07g13950 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.787, evm.TU.LG07.934 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00034532, Pov_00039768 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb6G31727, Lb7G32914 |
| Poaceae | Echinochloa crus-galli | 7 | AH07.610, AH09.2502, BH05.1545, BH07.735, BH09.2725 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0104010, gene-QOZ80_2BG0157310 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0204960.1, HORVU.MOREX.r3.6HG0568250.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_021077, gene-QYE76_046735 |
| Poaceae | Oryza coarctata | 4 | Oco03G004240, Oco04G004200, Oco04G004210, Oco07G017490 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g09060.1, LOC_Os04g55480.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_04G062500, gene-BS78_06G250900 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0202287, Pt_Chr0300720, Pt_Chr0300775, Pt_Chr0302596 ... |
| Poaceae | Sporobolus alterniflorus | 4 | Chr15G025060, Chr22G012520, Chr23G002470, Chr26G016880 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G873400, Tel6E01G302900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC2AG072370, gene_TRIDC2BG078350 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS2A02G515000.1, TraesCS2A02G515200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb068570_P002, Zm00001eb234370_P001 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-23013, nbis-gene-33573, nbis-gene-47991 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g12321, Zma_g20553, Zma_g22094 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.971, evm.TU.LG22.101 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc02g04040, gene.Posoc02g23850 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.57, evm.TU.Scaffold_11_RagTag.191 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12873, nbisL1-mrna-14257 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-20049, nbisL1-mrna-21313 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-14384, nbisL1-mrna-16497 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000005l.263, evm.TU.utg000033l.38 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00010115, Maker00014860 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-16735, nbisL1-mrna-328 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-14460, nbisL1-mrna-19037 |
| Salicaceae | Populus euphratica | 4 | populus_peu05743, populus_peu14103, populus_peu23216 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132603151, gene-LOC132633320 |
| Solanaceae | Solanum chilense | 2 | SOLCI002474300, SOLCI003056200 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107012390, gene-LOC107024273 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10968, gene_8982 |
| Tamaricaceae | Tamarix chinensis | 2 | TC08G1442, TC10G1283 |
| Zosteraceae | Zostera marina | 2 | Zosma04g18000.v3.1, Zosma06g25840.v3.1 |