Basic Information
Locus ID:
Oco04G004130
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 3535293 | 3538916 | + | Oco04G004130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 35,040.25 Da | 49.92 | 64.48 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 2.6E-80 | IPR004854 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 5.9E-35 | - |
| Gene3D | G3DSA:2.40.40.50 | - | 6 | 107 | 8.0E-44 | IPR042299 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 315 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 282 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 269 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_040376963.1 | ubiquitin fusion degradation protein 1 homolog [Oryza brachyantha] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | J3LA83 | Ubiquitin fusion degradation protein 1 homolog OS=Oryza brachyantha OX=4533 GN=102714980 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology