Basic Information
Locus ID:
Oco04G003960
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 3378082 | 3383122 | + | Oco04G003960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 40,393.58 Da | 49.62 | 77.21 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.02569E-26 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 7.3E-15 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 244 | 299 | 4.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 148 | 184 | 1.0E-13 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 325 | 361 | 7.5E-11 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 129 | 188 | 2.02E-11 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 240 | 307 | 1.14E-22 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 311 | 367 | 8.22E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 80 | 4.84E-20 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.9E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 317 | 367 | 1.0E-21 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 139 | 189 | 1.6E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 236 | 299 | 3.3E-27 | IPR036353 |
| SMART | SM00165 | uba_6 | 326 | 363 | 5.4E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 146 | 186 | 6.3E-7 | IPR015940 |
| SMART | SM00727 | CBM | 242 | 285 | 2.7E-4 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 3.3E-19 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 369 | 1.2E-114 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 324 | 364 | 13.727652 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 145 | 187 | 13.052933 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 17.865925 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 320 | 336 | 2.5E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 337 | 351 | 2.5E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 270 | 292 | 2.5E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 367 | 2.5E-29 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 131 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 131 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_006646969.1 | ubiquitin receptor RAD23b-like isoform X2 [Oryza brachyantha] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | J3LA63 | Ubiquitin receptor RAD23 OS=Oryza brachyantha OX=4533 GN=102711591 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology