Basic Information
Locus ID:
Oco04G003060
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 2524603 | 2529247 | - | Oco04G003060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.06 | 51,476.88 Da | 58.05 | 82.06 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 238 | 286 | 1.28142E-16 | - |
| Pfam | PF12906 | RING-variant domain | 238 | 285 | 1.2E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 234 | 289 | 3.23E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 226 | 293 | 3.6E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 237 | 286 | 1.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 230 | 292 | 19.752609 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 444 | 472 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 155 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 77 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015689591.1 | uncharacterized protein LOC102716758 [Oryza brachyantha] | 0 |
| TrEMBL | A0A0E0CG35 | RING-CH-type domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology