Basic Information
Locus ID:
Oco04G001680
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 1363005 | 1373271 | + | Oco04G001680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 37,860.93 Da | 68.68 | 97.80 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 150 | 198 | 4.2193E-19 | - |
| Pfam | PF12906 | RING-variant domain | 150 | 197 | 7.7E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 148 | 201 | 1.41E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 209 | 5.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 149 | 198 | 1.9E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 142 | 204 | 20.136959 | IPR011016 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_015626840.1 | E3 ubiquitin-protein ligase MARCH2 isoform X1 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | B8AH24 | RING-CH-type domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05734 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology