Basic Information
Locus ID:
Oco04G001560
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 1263066 | 1266634 | - | Oco04G001560 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 37,416.04 Da | 40.79 | 72.69 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 294 | 332 | 6.6E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 281 | 341 | 3.2E-8 | IPR013083 |
| PIRSF | PIRSF036836 | SBP1_RNase_bind | 6 | 342 | 2.3E-98 | IPR017066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 295 | 330 | 9.907503 | IPR001841 |
| Coils | Coil | Coil | 191 | 218 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10650.1 | SBP (S-ribonuclease binding protein) family protein. | 0 |
| RefSeq | XP_015627613.1 | BOI-related E3 ubiquitin-protein ligase 1 [Oryza sativa Japonica Group] | 0 |
| Q9FHE4 | BOI-related E3 ubiquitin-protein ligase 1 OS=Arabidopsis thaliana OX=3702 GN=BRG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F0W0 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_033253 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg18757, jg9477 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_18120, gene_19510 |
| Amaranthaceae | Atriplex hortensis | 3 | Ah000598, Ah013588, Ah019643 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g117250, BVRB_6g148610 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg30545, Sbi_jg42906, Sbi_jg45516, Sbi_jg58701 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg11363, Seu_jg28568 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002440, GOSA_00014934 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35324, Sgl40681, Sgl55223, Sgl60472 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000000722, gene:ENSEOMG00000005449 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.5AG0023110, CQ.Regalona.r1.5BG0024550 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30139350, pistato.v30222120 |
| Apiaceae | Apium graveolens | 1 | Ag6G00319 |
| Arecaceae | Cocos nucifera | 1 | COCNU_13G000270 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103723535 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.2216.V1.1, AsparagusV1_06.792.V1.1 |
| Asteraceae | Flaveria trinervia | 5 | Ftri13G18350, Ftri18G09093, Ftri1G05829, Ftri3G22299 ... |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G10650.1, AT1G60610.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008132m.g.v1.0, Thhalv10023576m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g09340.v2.2, Sp2g04120.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g004060.2N, BniB04g028930.2N, BniB07g046520.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq04G1947, Ceq07G1392 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl04G2134, Cgl07G1479 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g03640 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-11077 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2865, evm.TU.LG10.745 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022134, Pov_00022388 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24049, Lb4G24059 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.279, BH07.344, CH03.4560 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0100600 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0552460.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_020002 |
| Poaceae | Oryza coarctata | 2 | Oco03G001690, Oco04G001560 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g03760.2 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G025100, gene-BS78_04G025400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0201330 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr0G011370, Chr0G011700 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G210600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG010370, gene_TRIDC6BG016810 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G084400.1, TraesCS6B02G118100.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb231170_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-30038, nbis-gene-33802 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12141, Zma_g14893 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG13.183 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g18510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_17_RagTag.227 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-23105 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-11692 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14756 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000013l.158 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00006747 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7067 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-15869 |
| Salicaceae | Populus euphratica | 3 | populus_peu21817, populus_peu21823, populus_peu30106 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132632648, gene-LOC132641098 |
| Solanaceae | Solanum chilense | 2 | SOLCI001453900, SOLCI001698100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014345, gene-LOC107018503 |
| Tamaricaceae | Tamarix chinensis | 1 | TC04G1141 |
| Zosteraceae | Zostera marina | 1 | Zosma06g00350.v3.1 |