halophFGD

Basic Information

Locus ID: Oco04G000820

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG04	687680	689759	-	Oco04G000820

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.17	30,281.83 Da	59.90	71.01	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	50	90	1.61E-6	IPR036047
MobiDBLite	mobidb-lite	consensus disorder prediction	13	42	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_006664955.2	uncharacterized protein LOC102712496 [Oryza brachyantha]	0
TrEMBL	A0A6G1FDJ9	F-box domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_029514 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	10	AH03.1463, BH01.2915, BH03.1162, BH03.1163, BH03.1222 ... BH03.1611, BH05.3348, CH03.1307, CH03.1766, CH05.3458
Poaceae	Eleusine coracana subsp. coracana	4	gene-QOZ80_5AG0391960, gene-QOZ80_5BG0439100 ... gene-QOZ80_7AG0570010, gene-QOZ80_7BG0601840
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0280310.1.CDS1
Poaceae	Lolium multiflorum	5	gene-QYE76_054582, gene-QYE76_054583, gene-QYE76_062775 ... gene-QYE76_065224, gene-QYE76_065386
Poaceae	Oryza coarctata	2	Oco04G000820, Oco17G001180
Poaceae	Oryza sativa	2	LOC_Os09g06620.1, LOC_Os09g06660.1
Poaceae	Paspalum vaginatum	2	gene-BS78_04G067400, gene-BS78_10G249300
Poaceae	Sporobolus alterniflorus	2	Chr06G015230, Chr27G011900
Poaceae	Thinopyrum elongatum	4	Tel1E01G554700, Tel1E01G554800, Tel3E01G443100 ... Tel7E01G258100
Poaceae	Triticum dicoccoides	3	gene_TRIDC3AG039780, gene_TRIDC3BG044880 ... gene_TRIDC7AG015240
Poaceae	Triticum aestivum	10	TraesCS1A02G344200.1, TraesCS1B02G357300.1 ... TraesCS1B02G358000.1.cds1, TraesCS1D02G346600.1.cds1, TraesCS3A02G267200.1.cds1, TraesCS3B02G300700.1.cds1, TraesCS3D02G267400.1.cds1, TraesCS7B02G030200.1.cds1, TraesCS7D02G129200.1.cds1, TraesCS7D02G129400.1
Poaceae	Zoysia japonica	1	nbis-gene-12564
Poaceae	Zoysia macrostachya	1	Zma_g25781