Basic Information
Locus ID:
Oco04G000100
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG04 | 88963 | 98767 | - | Oco04G000100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 196,959.45 Da | 52.37 | 85.73 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1393 | 1820 | 3.52195E-120 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1440 | 1825 | 2.8E-82 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1385 | 1818 | 2.22E-95 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 123 | 593 | 6.14E-38 | IPR016024 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1333 | 1586 | 1.7E-42 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1698 | 1823 | 1.7E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 113 | 415 | 1.8E-48 | IPR011989 |
| SMART | SM00185 | arm_5 | 205 | 246 | 94.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 288 | 326 | 17.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 1407 | 1825 | 5.0E-83 | IPR000569 |
| SMART | SM00185 | arm_5 | 156 | 203 | 6.7 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1433 | 1825 | 57.079384 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 601 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 906 | 926 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1070 | 1091 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 986 | 1022 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 904 | 1027 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 960 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1071 | 1091 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 459 | 479 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1204 | 1225 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 628 | 654 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_015625166.1 | E3 ubiquitin-protein ligase UPL3 [Oryza sativa Japonica Group] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CD16 | HECT-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_038898 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology