Basic Information
Locus ID:
Oco03G025790
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 31610482 | 31616498 | + | Oco03G025790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 84,837.86 Da | 66.53 | 66.98 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 699 | 739 | 6.54434E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 697 | 744 | 1.1E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 699 | 745 | 1.41E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 685 | 750 | 7.0E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 700 | 739 | 10.541882 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 172 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 438 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 429 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 48 | 65 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 246 | - | - |
| Coils | Coil | Coil | 76 | 96 | - | - |
| Coils | Coil | Coil | 441 | 461 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052142123.1 | uncharacterized protein LOC127761832 isoform X2 [Oryza glaberrima] | 0 |
| TrEMBL | I1P5P7 | RING-type domain-containing protein OS=Oryza glaberrima OX=4538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology