Basic Information
Locus ID:
Oco03G025760
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 31589982 | 31597286 | + | Oco03G025760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 92,028.58 Da | 56.51 | 78.12 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 21 | 175 | 1.07491E-41 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 761 | 802 | 1.93678E-23 | - |
| Pfam | PF04564 | U-box domain | 757 | 825 | 1.1E-17 | IPR003613 |
| Pfam | PF00069 | Protein kinase domain | 482 | 684 | 3.7E-25 | IPR000719 |
| SUPERFAMILY | SSF57850 | RING/U-box | 751 | 827 | 5.3E-24 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 458 | 718 | 5.19E-42 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 47 | 141 | 1.67E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 756 | 832 | 8.8E-27 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 548 | 746 | 5.0E-26 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 453 | 547 | 2.0E-18 | - |
| SMART | SM00504 | Ubox_2 | 760 | 823 | 5.8E-27 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 475 | 738 | 23.170586 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 756 | 830 | 35.959538 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 187 | 241 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 275 | 303 | - | - |
| Coils | Coil | Coil | 273 | 293 | - | - |
| Coils | Coil | Coil | 320 | 356 | - | - |
| Coils | Coil | Coil | 364 | 391 | - | - |
| Coils | Coil | Coil | 399 | 419 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_052141944.1 | U-box domain-containing protein 33-like isoform X1 [Oryza glaberrima] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0K729 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.3789, BH07.3609, CH07.316, CH07.3685 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151050, gene-QOZ80_2BG0206470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478990.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037771 |
| Poaceae | Oryza coarctata | 2 | Oco03G025760, Oco04G026230 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G324800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604597, Pt_Chr0605662 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026650, Chr13G000470 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G339600, Tel5E01G341900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG032910, gene_TRIDC5AG033150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G203900.1, TraesCS5A02G205800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb190970_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39767, nbis-gene-8270 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17452 |