Basic Information
Locus ID:
Oco03G025040
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 31068766 | 31080103 | - | Oco03G025040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 88,039.41 Da | 46.07 | 70.55 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 528 | 805 | 1.88985E-61 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 561 | 598 | 3.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 605 | 639 | 0.003 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 1.8E-7 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 689 | 722 | 2.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 772 | 805 | 0.023 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 525 | 556 | 0.15 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 517 | 805 | 2.01E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 658 | 805 | 4.5E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 507 | 657 | 3.8E-30 | IPR015943 |
| SMART | SM00320 | WD40_4 | 602 | 642 | 7.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 556 | 5.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 559 | 598 | 1.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 645 | 681 | 92.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 684 | 722 | 1.7E-6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0036 | IPR006594 |
| SMART | SM00320 | WD40_4 | 766 | 805 | 3.6E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 725 | 764 | 6.2 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.247652 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 691 | 731 | 9.004632 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 566 | 598 | 9.862871 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 773 | 805 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 566 | 598 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 609 | 643 | 8.737287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 565 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 773 | 805 | 12.472858 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 438 | - | - |
| Coils | Coil | Coil | 369 | 398 | - | - |
| Coils | Coil | Coil | 79 | 99 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_052143429.1 | transcriptional corepressor LEUNIG_HOMOLOG-like [Oryza glaberrima] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0GER0 | LisH domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology