Basic Information
Locus ID:
Oco03G024250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 30278653 | 30281554 | + | Oco03G024250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 32,310.27 Da | 43.90 | 83.07 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 174 | 258 | 7.3E-6 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 30 | 152 | 2.5E-9 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 23 | 283 | 5.92E-87 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 19 | 285 | 1.0E-98 | IPR036397 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 0 |
| RefSeq | XP_015625500.1 | probable CCR4-associated factor 1 homolog 7 [Oryza sativa Japonica Group] | 0 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1F2G2 | poly(A)-specific ribonuclease OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_002458 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology