Basic Information
Locus ID:
Oco03G023420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 29525886 | 29533532 | - | Oco03G023420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 81,141.27 Da | 53.86 | 80.00 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 27 | 219 | 2.62282E-96 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 239 | 332 | 8.1E-9 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 346 | 418 | 3.1E-9 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 43 | 199 | 4.0E-11 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 83 | 355 | 3.93E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 10 | 219 | 2.0E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 220 | 435 | 1.9E-51 | IPR027417 |
| SMART | SM00487 | ultradead3 | 35 | 228 | 1.3E-20 | IPR014001 |
| SMART | SM00490 | helicmild6 | 263 | 334 | 9.4E-11 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 28 | 419 | 5.2E-118 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 47 | 212 | 18.839888 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 232 | 373 | 10.782797 | IPR001650 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35740.1 | DEAD/DEAH box RNA helicase family protein . Encodes RECQ3, an ATP-dependent helicase. | 0 |
| RefSeq | XP_015622950.1 | ATP-dependent DNA helicase Q-like 3 isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q9FT72 | ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana OX=3702 GN=RECQL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0K5Y9 | ATP-dependent DNA helicase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology