Basic Information
Locus ID:
Oco03G021080
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 27055595 | 27056932 | - | Oco03G021080 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 48,036.00 Da | 45.60 | 96.34 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 41 | 82 | 4.13384E-22 | - |
| Pfam | PF04564 | U-box domain | 37 | 108 | 1.1E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 196 | 433 | 6.99E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 33 | 113 | 1.84E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 131 | 427 | 5.5E-17 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 112 | 2.2E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 40 | 103 | 1.4E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 36 | 110 | 35.030739 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_015623806.1 | U-box domain-containing protein 21 [Oryza sativa Japonica Group] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0K518 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology