Basic Information
Locus ID:
Oco03G019030
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 24978786 | 24981719 | + | Oco03G019030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.60 | 51,377.72 Da | 48.57 | 73.07 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 159 | 442 | 5.41049E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 8.3E-7 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 187 | 245 | 3.5E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 318 | 357 | 0.0027 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 407 | 442 | 5.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 147 | 444 | 9.42E-60 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 96 | 445 | 1.9E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 403 | 442 | 1.4E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 2.1E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 315 | 357 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 400 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 219 | 1.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 260 | 0.92 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 410 | 443 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 443 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 305 | 11.708317 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 187 | 224 | 8.966513 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 228 | 12.212779 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 14.78598 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 429 | 443 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 133 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_052145059.1 | cell division cycle 20.2, cofactor of APC complex-like [Oryza glaberrima] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0GBQ7 | ANAPC4_WD40 domain-containing protein OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology