Basic Information
Locus ID:
Oco03G018660
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 24628844 | 24630001 | - | Oco03G018660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 41,258.82 Da | 55.43 | 66.13 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 164 | 207 | 2.25944E-17 | - |
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 2.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 159 | 213 | 8.84E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 213 | 1.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 206 | 3.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 207 | 12.563043 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 266 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 335 | 385 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052145160.1 | E3 ubiquitin-protein ligase Os04g0590900-like [Oryza glaberrima] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0CU86 | RING-type E3 ubiquitin transferase OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology