Basic Information
Locus ID:
Oco03G018430
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
EF-hand domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 24306449 | 24312959 | + | Oco03G018430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 56,774.10 Da | 34.19 | 92.37 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 63 | 296 | 2.78777E-99 | - |
| CDD | cd00051 | EFh | 345 | 404 | 4.69327E-16 | IPR002048 |
| Pfam | PF13405 | EF-hand domain | 418 | 442 | 5.1E-7 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 345 | 405 | 1.3E-11 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 69 | 294 | 1.6E-43 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 69 | 322 | 1.75E-56 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 320 | 462 | 4.97E-38 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 305 | 471 | 2.3E-50 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 134 | 302 | 2.0E-42 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 65 | 133 | 2.2E-9 | - |
| SMART | SM00054 | efh_1 | 416 | 444 | 0.0026 | IPR002048 |
| SMART | SM00054 | efh_1 | 380 | 408 | 2.2 | IPR002048 |
| SMART | SM00220 | serkin_6 | 64 | 297 | 3.2E-44 | IPR000719 |
| SMART | SM00054 | efh_1 | 344 | 372 | 1.1E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 412 | 447 | 14.262346 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 376 | 411 | 9.854874 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 340 | 375 | 15.601326 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 61 | 297 | 29.545019 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 353 | 365 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 425 | 437 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35310.1 | calmodulin-domain protein kinase 5. calmodulin-domain protein kinase CDPK isoform 5 (CPK5) | 0 |
| RefSeq | XP_015625261.1 | calcium-dependent protein kinase 5 [Oryza sativa Japonica Group] | 0 |
| Q0DYK7 | Calcium-dependent protein kinase 5 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK5 PE=3 SV=1 | 0 | |
| TrEMBL | A0A0E0K3Q7 | Calcium-dependent protein kinase 26 OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Oco03G018430.