Basic Information
Locus ID:
Oco03G018250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
BRH1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 24100524 | 24101529 | - | Oco03G018250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 22,829.35 Da | 56.57 | 109.62 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 112 | 155 | 2.96639E-14 | - |
| Pfam | PF13639 | Ring finger domain | 111 | 155 | 1.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 161 | 3.12E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 159 | 1.4E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 112 | 154 | 1.8E-6 | IPR001841 |
| SMART | SM00744 | ringv_2 | 111 | 155 | 0.0097 | IPR011016 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 112 | 155 | 12.356501 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61460.1 | brassinosteroid-responsive RING-H2. Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. | 0 |
| RefSeq | XP_040377011.1 | brassinosteroid-responsive RING protein 1-like [Oryza brachyantha] | 0 |
| Q9XF92 | Brassinosteroid-responsive RING protein 1 OS=Arabidopsis thaliana OX=3702 GN=BRH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1F8J4 | RING-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_017045 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology