Basic Information
Locus ID:
Oco03G018100
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 23968508 | 23973464 | + | Oco03G018100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 48,250.16 Da | 28.81 | 74.92 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 143 | 179 | 8.1E-6 | IPR001680 |
| Pfam | PF18044 | CCCH-type zinc finger | 113 | 133 | 5.9E-6 | IPR041367 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 300 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 305 | 339 | 0.011 | IPR001680 |
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 110 | 134 | 2.2E-5 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 141 | 440 | 1.83E-40 | IPR036322 |
| Gene3D | G3DSA:2.30.30.1190 | - | 106 | 140 | 8.7E-6 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 285 | 449 | 1.6E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 141 | 284 | 1.3E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 356 | 400 | 170.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 340 | 2.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 140 | 179 | 2.0E-6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 29 | 53 | 0.57 | IPR000571 |
| SMART | SM00320 | WD40_4 | 219 | 256 | 4.9 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 111 | 135 | 0.0022 | IPR000571 |
| SMART | SM00320 | WD40_4 | 403 | 440 | 9.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 263 | 300 | 0.0019 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 28 | 54 | 9.826258 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 147 | 179 | 11.260138 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 109 | 136 | 14.323637 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 270 | 303 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 147 | 188 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 270 | 309 | 11.64467 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 287 | 301 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 327 | 341 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 287 | 301 | 1.3E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 166 | 180 | 1.3E-7 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_006647681.1 | zinc finger CCCH domain-containing protein 17 [Oryza brachyantha] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | J3LFU4 | Zinc finger CCCH domain-containing protein 48 OS=Oryza brachyantha OX=4533 GN=102711672 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology