Basic Information
Locus ID:
Oco03G017570
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 23373558 | 23378917 | + | Oco03G017570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 111,278.79 Da | 48.15 | 82.28 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 33 | 197 | 2.60239E-36 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 906 | 947 | 1.00709E-21 | - |
| Pfam | PF04564 | U-box domain | 903 | 973 | 2.1E-15 | IPR003613 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 628 | 868 | 9.2E-27 | IPR001245 |
| SUPERFAMILY | SSF57850 | RING/U-box | 899 | 973 | 1.41E-22 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 600 | 868 | 1.2E-48 | IPR011009 |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 33 | 160 | 3.77E-5 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 601 | 695 | 5.6E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 900 | 976 | 1.5E-25 | IPR013083 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 696 | 895 | 3.2E-36 | - |
| SMART | SM00504 | Ubox_2 | 905 | 968 | 2.0E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 901 | 975 | 30.165604 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 623 | 880 | 25.417891 | IPR000719 |
| Coils | Coil | Coil | 309 | 360 | - | - |
| Coils | Coil | Coil | 473 | 545 | - | - |
| Coils | Coil | Coil | 388 | 436 | - | - |
| Coils | Coil | Coil | 568 | 588 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_025878556.1 | U-box domain-containing protein 33-like [Oryza sativa Japonica Group] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0K3B9 | Serine/threonine-protein kinase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH07.2922, BH07.2744, CH07.2816 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0140170, gene-QOZ80_2BG0195840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0602150.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G017570, Oco04G018320 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g44610.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G223200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205955 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr09G024000 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6AG037900 |
| Poaceae | Triticum aestivum | 2 | TraesCS6A02G245400.1, TraesCS6D02G227800.1 |
| Poaceae | Zea mays | 1 | Zm00001eb186880_P001 |