Basic Information
Locus ID:
Oco03G016380
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 22124583 | 22129224 | - | Oco03G016380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 28,961.58 Da | 63.97 | 66.52 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 41 | 99 | 2.74679E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 43 | 97 | 2.1E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 40 | 110 | 3.73E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 110 | 2.6E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 43 | 97 | 1.1E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 43 | 98 | 12.017182 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 58 | 67 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 112 | 165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 131 | 150 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G74990.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025878515.1 | E3 ubiquitin-protein ligase RMA1H1 isoform X3 [Oryza sativa Japonica Group] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0K2V4 | RING-type E3 ubiquitin transferase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology