Basic Information
Locus ID:
Oco03G016320
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 22065991 | 22076619 | + | Oco03G016320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.79 | 107,604.64 Da | 53.63 | 80.87 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00035 | Double-stranded RNA binding motif | 731 | 790 | 3.3E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 254 | 363 | 4.3E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 729 | 791 | 3.64E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 854 | 927 | 3.31E-12 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 131 | 389 | 2.68E-21 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 726 | 808 | 4.5E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 131 | 391 | 1.6E-24 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 850 | 928 | 2.7E-5 | - |
| SMART | SM00358 | DRBM_3 | 727 | 791 | 1.4E-5 | IPR014720 |
| SMART | SM00577 | forpap2 | 198 | 372 | 1.1E-12 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 853 | 919 | 0.055 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 852 | 920 | 9.464921 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 137 | 388 | 16.44495 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 726 | 792 | 10.630184 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 547 | - | - |
| Coils | Coil | Coil | 773 | 793 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_015626278.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Oryza sativa Japonica Group] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0D3F820 | protein-serine/threonine phosphatase OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology