Basic Information
Locus ID:
Oco03G015390
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 21095986 | 21099477 | - | Oco03G015390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.14 | 62,622.03 Da | 60.20 | 78.74 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 62 | 450 | 9.87E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 53 | 462 | 6.7E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 251 | 290 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 341 | 97.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 361 | 399 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 136 | 177 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 56 | 95 | 12.0 | IPR001680 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 404 | 429 | 8.8E-79 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 74 | 94 | 8.8E-79 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 153 | 181 | 8.8E-79 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 376 | 403 | 8.8E-79 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 430 | 456 | 8.8E-79 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 262 | 289 | 8.8E-79 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 290 | 317 | 8.8E-79 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 318 | 346 | 8.8E-79 | IPR000009 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 177 | 200 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G51690.2 | protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform. 55 kDa B regulatory subunit of phosphatase 2A mRNA, | 0 |
| RefSeq | XP_052143757.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform-like isoform X2 [Oryza glaberrima] | 0 |
| Q38821 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0K2G8 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 1 | CH07.2503 |
| Poaceae | Oryza coarctata | 1 | Oco03G015390 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g40454.1 |