Basic Information
Locus ID:
Oco03G015180
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
AT hook motif family protein, expressed
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 20839295 | 20846268 | - | Oco03G015180 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 82,398.42 Da | 38.90 | 66.76 | -0.83 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 499 | 545 | 3.21E-8 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 43 | 245 | 1.63E-6 | IPR016024 |
| Gene3D | G3DSA:2.30.30.140 | - | 495 | 546 | 3.5E-12 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 609 | 625 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 626 | 704 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 760 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 493 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 554 | 572 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 316 | 497 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 427 | 448 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80810.5 | - | 0 |
| RefSeq | XP_052142451.1 | sister chromatid cohesion protein PDS5 homolog C-like [Oryza glaberrima] | 0 |
| A8MRD9 | Sister chromatid cohesion protein PDS5 homolog D OS=Arabidopsis thaliana OX=3702 GN=PDS5D PE=2 SV=3 | 0 | |
| TrEMBL | A0A0E0CND1 | Tudor domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology