Basic Information
Locus ID:
Oco03G015160
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 20785728 | 20788076 | + | Oco03G015160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 29,649.10 Da | 47.88 | 78.12 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 112 | 152 | 2.992E-10 | - |
| Pfam | PF13639 | Ring finger domain | 111 | 151 | 3.7E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 111 | 151 | 1.63E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 153 | 1.0E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 112 | 153 | 4.4E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 112 | 151 | 10.527129 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 104 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039849385.1 | E3 ubiquitin-protein ligase Os06g0535400-like [Panicum virgatum] | 0 |
| TrEMBL | A0A8J5W1S8 | RING-type domain-containing protein OS=Zizania palustris OX=103762 GN=GUJ93_ZPchr0006g44797 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.2577, AH07.2578, BH07.2388, CH07.2462 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0137240, gene-QOZ80_2BG0192840 |
| Poaceae | Oryza coarctata | 1 | Oco03G015160 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr06G008410, Chr13G007740, Chr15G009920 |
| Poaceae | Zea mays | 2 | Zm00001eb246920_P001, Zm00001eb246930_P001 |