Basic Information
Locus ID:
Oco03G013950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 19664570 | 19669748 | + | Oco03G013950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 80,847.43 Da | 40.71 | 88.50 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 349 | 652 | 3.82933E-165 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 40 | 332 | 7.8391E-175 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 354 | 648 | 1.5E-43 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 348 | 652 | 4.45E-49 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 39 | 332 | 1.2E-38 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 347 | 653 | 2.8E-50 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 38 | 332 | 3.2E-28 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 349 | 653 | 39.469433 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 40 | 333 | 27.776491 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_052142809.1 | glycerophosphodiester phosphodiesterase GDPDL3-like [Oryza glaberrima] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6G1EWE5 | glycerophosphodiester phosphodiesterase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_011031 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology