Basic Information
Locus ID:
Oco03G011930
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 17242787 | 17245375 | + | Oco03G011930 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.23 | 46,348.18 Da | 56.15 | 98.15 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 26 | 67 | 1.34973E-22 | - |
| Pfam | PF04564 | U-box domain | 22 | 90 | 5.3E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 13 | 89 | 6.18E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 151 | 422 | 1.78E-13 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 9 | 98 | 1.8E-24 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 110 | 431 | 1.4E-12 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 25 | 88 | 2.8E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 21 | 95 | 36.605274 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G64660.1 | CYS, MET, PRO, and GLY protein 2. | 0 |
| RefSeq | XP_040377035.1 | U-box domain-containing protein 27 [Oryza brachyantha] | 0 |
| Q9FLF4 | U-box domain-containing protein 27 OS=Arabidopsis thaliana OX=3702 GN=PUB27 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1FB34 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_022745 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg10603, jg11622, jg17170, jg21316, jg23069, jg39638 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_22889, gene_25226 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah024309, Ah027134 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g011130, BVRB_6g133060 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13392, Sbi_jg52455 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9389 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00013399, GOSA_00021056 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl10208, Sgl15410, Sgl15444, Sgl33729, Sgl39040, Sgl39061 |
| Amaranthaceae | Chenopodium album | 5 | gene:ENSEOMG00000002372, gene:ENSEOMG00000003771 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.1AG0014140, CQ.Regalona.r1.1BG0011910 ... |
| Apiaceae | Apium graveolens | 4 | Ag3G01898, Ag7G02096, Ag7G02215, AgUnG01277 |
| Arecaceae | Cocos nucifera | 4 | COCNU_15G001160, COCNU_15G001170, contig69548405G000010 ... |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103703158, gene-LOC103704330, gene-LOC103714301 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G25905 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G18710.1, AT5G09800.1, AT5G64660.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10004299m.g.v1.0, Thhalv10020785m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp2g27720.v2.2, Sp3g16770.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g045730.2N, BniB06g012950.2N, BniB07g030080.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1952, Ceq06G1893 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl03G2099, Cgl06G1968 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g00980, gene.Cymno08g08210 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-10198, nbisL1-mrna-5166 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG02.842, evm.TU.LG06.732 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00020509, Pov_00036897 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.2117, AH09.962, BH07.2077, CH07.1975 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0133240, gene-QOZ80_2BG0188770 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0167460.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022901, gene-QYE76_043918 |
| Poaceae | Oryza coarctata | 4 | Oco03G011930, Oco04G012370, Oco07G005430, Oco08G005540 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g33680.1, LOC_Os04g34140.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G156000, gene-BS78_06G090600 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr06G010320, Chr09G014840, Chr13G010870, Chr15G011770 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G528900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG043280, gene_TRIDC2BG046090 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G298600.1.cds1, TraesCS2B02G315100.1.cds1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb181650_P001, Zm00001eb238130_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-20783, nbis-gene-7698 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13654, Zma_g21263 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG01.1137, evm.TU.LG03.2450, evm.TU.LG14.478 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g21160 |
| Rhizophoraceae | Bruguiera sexangula | 3 | evm.TU.Scaffold_3_RagTag.1002, evm.TU.Scaffold_6_RagTag.1556 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-1092, nbisL1-mrna-17616, nbisL1-mrna-18632 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-1094, nbisL1-mrna-19834, nbisL1-mrna-902 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12209, nbisL1-mrna-13184, nbisL1-mrna-2278 |
| Rhizophoraceae | Kandelia candel | 3 | add.evm.TU.utg000002l.144, add.evm.TU.utg000011l.367 ... |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00011704 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-20296, nbisL1-mrna-22838 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-1703, nbisL1-mrna-18414, nbisL1-mrna-18630 |
| Salicaceae | Populus euphratica | 4 | populus_peu13606, populus_peu14857, populus_peu22770 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132614985, gene-LOC132627287 |
| Solanaceae | Solanum chilense | 2 | SOLCI004764100, SOLCI006131800 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107003332, gene-LOC107016055 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_10305, gene_1572 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2852, TC04G0489 |
| Zosteraceae | Zostera marina | 1 | Zosma04g23730.v3.1 |