Basic Information
Locus ID:
Oco03G011890
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 17149753 | 17151054 | - | Oco03G011890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.60 | 46,258.88 Da | 55.33 | 98.06 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 12 | 60 | 3.35545E-21 | - |
| Pfam | PF04564 | U-box domain | 8 | 87 | 5.7E-18 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 205 | 413 | 5.38E-18 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 92 | 3.18E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 117 | 412 | 7.2E-18 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 90 | 8.3E-25 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 11 | 83 | 3.8E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 90 | 30.873259 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_040376547.1 | E3 ubiquitin-protein ligase PUB23-like [Oryza brachyantha] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1FB15 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_022726 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology