Basic Information
Locus ID:
Oco03G011320
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 16308102 | 16310309 | - | Oco03G011320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.81 | 43,828.85 Da | 44.05 | 74.48 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 211 | 242 | 0.095 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 316 | 347 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 354 | 1.48E-29 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 74 | 413 | 1.9E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 204 | 242 | 4.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 347 | 4.1E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 201 | 0.28 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 211 | 251 | 8.770704 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 314 | 350 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 314 | 350 | 8.913786 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 334 | 348 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_015627230.1 | WD repeat-containing protein LWD1 [Oryza sativa Japonica Group] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0K0I0 | WD_REPEATS_REGION domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology