Basic Information
Locus ID:
Oco03G010680
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 15161120 | 15162547 | - | Oco03G010680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.75 | 39,950.04 Da | 48.00 | 75.70 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 310 | 350 | 1.1E-7 | IPR002893 |
| SUPERFAMILY | SSF81901 | HCP-like | 110 | 227 | 1.57E-10 | - |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 309 | 356 | 2.44E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 64 | 238 | 7.4E-16 | IPR011990 |
| Gene3D | G3DSA:6.10.140.2220 | - | 302 | 356 | 1.0E-9 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 308 | 350 | 10.79031 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 36 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 0 |
| RefSeq | XP_015624778.1 | F-box protein At5g50450 [Oryza sativa Japonica Group] | 0 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 0 | |
| TrEMBL | A2X578 | MYND-type domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_07351 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology