Basic Information
Locus ID:
Oco03G010000
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Vacuolar protein sorting-associated protein 62
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 13844766 | 13893406 | - | Oco03G010000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 467,773.06 Da | 44.81 | 88.98 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2556 | 2660 | 3.12838E-8 | - |
| CDD | cd00821 | PH | 834 | 931 | 0.00496689 | - |
| Pfam | PF00168 | C2 domain | 2556 | 2662 | 7.9E-8 | IPR000008 |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 115 | 2.8E-30 | IPR026854 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1938 | 2081 | 4.5E-12 | IPR009291 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2218 | 2303 | 2.1E-7 | IPR009291 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3744 | 3879 | 2.2E-8 | IPR031645 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 140 | 380 | 7.8E-63 | IPR031646 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 574 | 797 | 7.0E-30 | IPR031642 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3181 | 3494 | 5.7E-12 | IPR009543 |
| SUPERFAMILY | SSF50729 | PH domain-like | 839 | 944 | 2.2E-6 | - |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2552 | 2661 | 5.95E-7 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2539 | 2679 | 2.0E-8 | IPR035892 |
| Gene3D | G3DSA:2.30.29.30 | - | 834 | 939 | 5.7E-5 | IPR011993 |
| SMART | SM00233 | PH_update | 794 | 938 | 2.8E-4 | IPR001849 |
| SMART | SM00694 | dysfc | 2892 | 2930 | 0.0093 | IPR006614 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2537 | 2673 | 10.627642 | IPR000008 |
| Coils | Coil | Coil | 4163 | 4166 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_015625353.1 | uncharacterized protein LOC4329342 isoform X1 [Oryza sativa Japonica Group] | 0 |
| A1Z713 | Intermembrane lipid transfer protein Vps13 OS=Drosophila melanogaster OX=7227 GN=Vps13 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1FG62 | C2 domain-containing protein (Fragment) OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_035949 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology