Basic Information
Locus ID:
Oco03G009960
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 13793445 | 13798386 | + | Oco03G009960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.10 | 51,750.33 Da | 47.93 | 65.63 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 72 | 165 | 5.77792E-37 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 288 | 352 | 1.23933E-19 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 76 | 165 | 1.4E-16 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 288 | 355 | 1.0E-15 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 285 | 356 | 1.57E-21 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 69 | 180 | 8.63E-26 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 62 | 183 | 1.0E-24 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 272 | 363 | 6.4E-21 | IPR036910 |
| SMART | SM00501 | bright_3 | 71 | 170 | 1.1E-21 | IPR001606 |
| SMART | SM01014 | ARID_2 | 67 | 165 | 1.3E-23 | - |
| SMART | SM00398 | hmgende2 | 287 | 356 | 7.4E-20 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 70 | 169 | 23.169716 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 288 | 355 | 15.495012 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 408 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_015624641.1 | high mobility group B protein 15 [Oryza sativa Japonica Group] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | Q6K7A1 | ARID transcription factor OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0469900 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology