Basic Information
Locus ID:
Oco03G009680
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Prefoldin subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 13384053 | 13387514 | + | Oco03G009680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 14,723.62 Da | 45.47 | 90.78 | -0.65 |
Protein Domain:
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G07340.1 | PREFOLDIN 1. | 0 |
| RefSeq | XP_015623225.1 | prefoldin subunit 1 [Oryza sativa Japonica Group] | 0 |
| Q94AF7 | Prefoldin subunit 1 OS=Arabidopsis thaliana OX=3702 GN=PFD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JZL1 | Prefoldin subunit 1 OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg32819 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_7983 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah034068 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g035980 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg20681, Sbi_jg23073 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg16939 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00009244 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl63393, Sgl67873 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016954, gene:ENSEOMG00000017806 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0012310, CQ.Regalona.r1.2BG0013830 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30283870 |
| Apiaceae | Apium graveolens | 1 | Ag10G02379 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103714095 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.48.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri8G16214 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G07340.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015026m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g13890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g029060.2N, BniB08g017660.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2667 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2801 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno06g06840 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0357s00009.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g11400 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG07.588 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00039508 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G31085 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.1680, BH07.1665, BH07.1686, CH07.1516 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0130260, gene-QOZ80_2BG0185500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0150100.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053662, gene-QYE76_056678 |
| Poaceae | Oryza coarctata | 2 | Oco03G009680, Oco04G010030 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g26440.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G374800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0601321, Pt_Chr0601348 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr06G011910, Chr09G016460, Chr13G013240, Chr15G013660 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G461500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG033860, gene_TRIDC2BG038570 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G247800.1, TraesCS2B02G269400.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb240760_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-19058, nbis-gene-21018 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g13489, Zma_g16300 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.136, evm.TU.LG15.13 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g14520 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.2346 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10486 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-5085 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.1381 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000790 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1798 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22375 |
| Salicaceae | Populus euphratica | 1 | populus_peu11241 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132616728 |
| Solanaceae | Solanum chilense | 1 | SOLCI002499600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023970 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_18021 |
| Zosteraceae | Zostera marina | 1 | Zosma05g26800.v3.1 |