Basic Information
Locus ID:
Oco03G008170
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 8939541 | 8945681 | + | Oco03G008170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 66,125.42 Da | 48.58 | 89.73 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 263 | 555 | 6.15143E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 336 | 0.073 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 555 | 6.6E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 347 | 385 | 0.065 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 478 | 512 | 0.034 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 298 | 1.5E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 258 | 555 | 2.52E-67 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 238 | 392 | 5.7E-34 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 393 | 579 | 9.1E-34 | IPR015943 |
| SMART | SM00320 | WD40_4 | 387 | 427 | 0.66 | IPR001680 |
| SMART | SM00320 | WD40_4 | 516 | 556 | 1.1E-11 | IPR001680 |
| SMART | SM00668 | ctlh | 94 | 151 | 2.3E-4 | IPR006595 |
| SMART | SM00320 | WD40_4 | 259 | 298 | 3.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 513 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 428 | 467 | 32.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 304 | 343 | 1.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 346 | 385 | 0.021 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 266 | 307 | 12.780889 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 523 | 565 | 14.652308 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 311 | 348 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 311 | 352 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 94 | 151 | 9.695288 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 61 | 93 | 8.741938 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 523 | 558 | 11.602863 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 266 | 300 | 10.416506 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_052143392.1 | WD repeat-containing protein 26 homolog [Oryza glaberrima] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1F6K9 | WD repeat-containing protein 26-like OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_010374 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology