Basic Information
Locus ID:
Oco03G007520
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein-only RNase P
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 7902572 | 7907556 | - | Oco03G007520 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.40 | 80,307.32 Da | 45.11 | 70.47 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18718 | PIN_PRORP | 553 | 676 | 1.432E-46 | - |
| Pfam | PF16953 | Protein-only RNase P | 495 | 722 | 3.2E-72 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 308 | 454 | 4.6E-54 | IPR033443 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 176 | 237 | 1.1E-17 | IPR033443 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 305 | 725 | 1.2E-189 | IPR011990 |
| Gene3D | G3DSA:3.40.50.11980 | - | 513 | 687 | 1.2E-189 | - |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 367 | 401 | 10.040608 | IPR002885 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 99 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 258 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 186 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_015623115.2 | proteinaceous RNase P 1, chloroplastic/mitochondrial isoform X1 [Oryza sativa Japonica Group] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0JYC8 | ribonuclease P OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology