Basic Information
Locus ID:
Oco03G006780
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 6797439 | 6799602 | - | Oco03G006780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.67 | 39,613.31 Da | 65.11 | 77.81 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 141 | 183 | 5.75698E-16 | - |
| Pfam | PF13639 | Ring finger domain | 141 | 183 | 1.7E-12 | IPR001841 |
| Pfam | PF12678 | RING-H2 zinc finger domain | 320 | 346 | 3.9E-9 | IPR024766 |
| SUPERFAMILY | SSF57850 | RING/U-box | 310 | 352 | 7.07E-14 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 137 | 191 | 1.08E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 188 | 1.2E-19 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 279 | 353 | 9.3E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 311 | 345 | 0.0076 | IPR001841 |
| SMART | SM00184 | ring_2 | 141 | 182 | 7.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 311 | 346 | 9.420654 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 141 | 183 | 12.607302 | IPR001841 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025878748.1 | uncharacterized protein LOC112937866 [Oryza sativa Japonica Group] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A0E0G4A7 | RING-type domain-containing protein OS=Oryza nivara OX=4536 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology