Basic Information
Locus ID:
Oco03G006760
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG03 | 6781698 | 6782380 | - | Oco03G006760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 20,514.63 Da | 54.49 | 102.81 | 0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 134 | 176 | 3.46717E-15 | - |
| Pfam | PF13639 | Ring finger domain | 133 | 176 | 2.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 128 | 180 | 1.46E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 192 | 3.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 134 | 175 | 7.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 176 | 11.869652 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052145034.1 | RING-H2 finger protein ATL74-like [Oryza glaberrima] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0CIJ2 | RING-type domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.1890, BH06.1735 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0541980, gene-QOZ80_6BG0495190 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0709440.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_034091, gene-QYE76_042759 |
| Poaceae | Oryza coarctata | 3 | Oco03G006760, Oco04G007030, Oco11G010420 |
| Poaceae | Oryza sativa | 2 | LOC_Os02g14990.1, LOC_Os06g34470.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G155300, gene-BS78_10G155400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400153, Pt_Chr0400167 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr10G015750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G571100 |
| Poaceae | Triticum aestivum | 5 | TraesCS7A02G347700.1, TraesCS7A02G563700.1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10265, nbis-gene-10276 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g30667, Zma_g30671 |